Paper Information


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Zhao XH, Jiang Y, Li J, Huq E, Chen ZJ, Xu DQ,Deng XW. (2018) COP1 SUPPRESSOR 4 promotes seedling photomorphogenesis by repressing CCA1 and PIF4 expression in Arabidopsis.Proc Natl Acad Sci U S A., 115: 11631-11636.


Liang K, Li NN, Wang X, Dai JY, Liu PL, Wang C, Chen XW, Gao N,Xiao JY. (2018) Cryo-EM structure of human mitochondrial trifunctional protein.Proc Natl Acad Sci US A., 115: 7039-7044.


Song QX, Ando A, Xu DQ, Fang L, Zhang TZ, Huq E, Qiao H,Deng XW, Chen ZJ. (2018) Diurnal down-regulation of ethylene biosynthesis mediates biomass heterosis.Proc Natl Acad Sci U S A.,115: 5606-5611.


Shi H, Lyu M, Luo YW, Liu SC, Li Y, He H, Wei N,Deng XW, Zhong SW. (2018) Genome-wide regulation of light-controlled seedling morphogenesis by three families of transcription factors.Proc Natl Acad Sci U S A.,115: 6482-6487.


Zhou YY,Yang L, Duan J, Cheng JK, Shen YP, Wang XJ, Han R, Li H, Li Z,Wang LH, William Terzaghi, Zhu DM, Chen HD,Deng XW, Li JG. (2018) Hinge region of Arabidopsis phyA plays an important role in regulating phyA function.Proc Natl Acad Sci U S A.,115: E11864-E11873.


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Zhang H, Dou SQ, He F, Luo JJ, Wei LP,Lu J. (2018) Genome-wide maps of ribosomal occupancy provide insights into adaptive evolution and regulatory roles of uORFs during Drosophila development.PLoS Biol., 16: e2003903.


Yang CZ, Zang WC, Tang ZF, Ji YP, Xu RD, Yang YF, Luo AP, Hu B, Zhang ZM, Liu ZH,Zheng XF. (2018) A20/TNFAIP3 Regulates the DNA Damage Response and Mediates Tumor Cell Resistance to DNA-Damaging Therapy.Cancer Res.,78: 1069-1082.


Li JC, Liang WJ, Li Y,Qian WQ. (2018) APURINIC/APYRIMIDINIC ENDONUCLEASE2 and ZINC FINGER DNA 3'-PHOSPHOESTERASE Play Overlapping Roles in the Maintenance of Epigenome and Genome Stability.Plant Cell,30: a1954-1970.


Lin F, Jiang Y, Li J, Yan TT, Fan LM, Liang JS, Chen ZJ, Xu DQ,Deng XW. (2018) B-BOX DOMAIN PROTEIN28 Negatively Regulates Photomorphogenesis by Repressing the Activity of Transcription Factor HY5 and Undergoes COP1-Mediated Degradation.Plant Cell, 30: 2006-2019.


Guan FH, Yu JY, Yu J, Liu Y, Li Y, Feng XH, Huang KC,Chang ZY, Ye S.(2018) Lateral interactions between protofilaments of the bacterial tubulin homolog FtsZ are essential for cell division.Elife., 7: e35578.


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Liu Y,Cai H. (2018) The Lrp of Mycobacterium tuberculosis regulates the innate immune response of macrophages.Cell Mol Immunol., 15: 934-936.


Yuan RR, Lan JQ, Fang YX, Yu H, Zhang JZ, Huang JY,Qin GJ. (2018) The Arabidopsis USL1 controls multiple aspects of development by affecting late endosome morphology.New Phytol., 219: 1388-1405.


Xia M, Han X, He H, Yu RB, Zhen G, Jia XP, Cheng BJ,Deng XW. (2018) Improved de novo genome assembly and analysis of the Chinese cucurbit Siraitia grosvenorii, also known as monk fruit or luo-han-guo.Gigascience.,7: doi: 10.1093.


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Guan JH, Yu SY,Zheng XF. (2018) NEDDylation antagonizes ubiquitination of proliferating cell nuclear antigen and regulates the recruitment of polymerase eta in response to oxidative DNA damage.Protein Cell., 9: 365-379.


Yan XW, Yang JY, Xu JW,Feng JX, Li Q. (2018) Histone chaperone Spt16p is required for heterochromatin mediated silencing in budding yeast.Protein Cell., 9: 652-658.


Xu DQ, Jiang Y, Li J, Holm M,Deng XW. (2018) The B-Box Domain Protein BBX21 Promotes Photomorphogenesis.Plant Physiol., 176: 2365-2375.


Chen ZS, Liu XF, Wang DH, Chen R, Zhang XL, Xu ZH,Bai SN. (2018) Transcription Factor OsTGA10 Is a Target of the MADS Protein OsMADS8 and Is Required for Tapetum Development.Plant Physiol.,176: 819-835.


Wang XC, Yang M, Ren DQ, Terzaghi W,Deng XW,He GM. (2018) Cis-regulated alternative splicing divergence and its potential contribution to environmental responses inArabidopsis.Plant J., doi: 10.1111/tpj.14142.


Yang ZR,Li Y. (2018) Dissection of RNAi-based antiviral immunity in plants.Curr Opin Virol., 32: 88-99.


Yang B, Song Z, Li C, Jiang J, Zhou Y, Wang R, Wang Q. Ni C, Liang Q, Chen H,Fan LM. (2018) RSM1, an Arabidopsis MYB protein, interacts with HY5/HYH to modulate seed germination and seedling development in response to abscisic acid and salinity. PLoS Genet., 14: e1007839.


Huang AY, Yang XX, Wang S, Zheng XN, Wu QX, Ye AY,Wei LP. (2018) Distinctive types of postzygotic single-nucleotide mosaicisms in healthy individuals revealed by genome-wide profiling of multiple organs.PLoS Genet.,14: e1007395.


Yang Y, Nicolas M, Zhang JZ, Yu H, Guo DS, Yuan RR, Zhang TT, Yang JZ, Cubas P,Qin GJ. (2018) The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis.PLoS Genet.,14: e1007296.


Deng MJ, Tao J, E C, Ye ZY, Jiang Z, Yu J,Su XD. (2018) Novel Mechanism for Cyclic Dinucleotide Degradation Revealed by Structural Studies of Vibrio Phosphodiesterase V-cGAP3.J Mol Biol.,430: 5080-5093.


Fu XM, Wang Y, Shao HQ, Ma J, Song XW, Zhang M,Chang ZY. (2018) DegP functions as a critical protease for bacterial acid resistance.FEBS J., 285: 3525-3538.


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Xiong XS, Li XY, Wang K,Yi CQ. (2018) Perspectives on topology of the human m1A methylome at single nucleotide resolution.RNA,24: 1437-1442.


Zhang HM, Zhou YX, Wang YA, Zhao YG, Qiu YT, Zhang XY, Yue D, Zhou Z,Wei WS. (2018) A surrogate reporter system for multiplexable evaluation of CRISPR/Cas9 in targeted mutagenesis.Sci Rep., 8: 1042.


Ai C,Kong L. (2018) CGPS: A machine learning-based approach integrating multiple gene set analysis tools for better prioritization of biologically relevant pathways.J Genet Genomics., 45: 489-504.


Sun Y, Huang JY, Zhong S, Gu HY, He S,Qu LJ. (2018) Novel DYW-type pentatricopeptide repeat (PPR) protein BLX controls mitochondrial RNA editing and splicing essential for early seed development of Arabidopsis.J Genet Genomics.,45: 155-168.


Cheng SJ, Jiang S, Shi FY, Ding Y,Gao G. (2018) Systematic identification and annotation of multiple-variant compound effects at transcription factor binding sites in human genome.J Genet Genomics.,45: 373-379.


Zeng H, He B,Yi CQ,Peng JY. (2018)Liquid biopsies: DNA methylation analyses in circulating cell-free DNA.J Genet Genomics., 45:185-192.


Liu X, Yang MK, Wang Y, Chen Z, Zhang J, Lin XH, Ge F,Zhao JD. (2018) Effects of PSII Manganese-Stabilizing Protein Succinylation on Photosynthesis in the Model Cyanobacterium Synechococcus sp PCC 7002.Plant Cell Physiol., 59: 1466-1482.


Yang CH, Li JR, Wu QX, Yang XX, Huang AY, Zhang J, Ye AY, Dou YM, Yan LL, Zhou WZ, Kong L, Wang M, Ai C, Yang DC,Wei LP. (2018) AutismKB 2.0: a knowledgebase for the genetic evidence of autism spectrum disorder.Database, doi: 10.1093/database/bay106.


Liu YN, Luo MY, Jin ZC, Zhao M,Qu H. (2018) dbLGL: an online leukemia gene and literature database for the retrospective comparison of adult and childhood leukemia genetics with literature evidence.Database,doi: 10.1093/database/bay062.


Yang H, Wang XC, Wei YX, Deng Z, Liu H, Chen JS, Dai LJ, Xia ZH,He GM, Li DJ.(2018) Transcriptomic analyses reveal molecular mechanisms underlying growth heterosis and weakness of rubber tree seedlings.BMC Plant Biol., 18: 10.


Zeng FL, Hua Y, Liu XQ, Liu SJ, Lao KJ, Zhang Z,Kong DC. (2018) Gpn2 and Rba50 Directly Participate in the Assembly of the Rpb3 Subcomplex in the Biogenesis of RNA Polymerase II.Mol Cell Biol., 38:e00091-18.


Liu YN, Luo MY, Li QJ, Lu JC, Zhao M,Qu H. (2018) CIGene: a literature-based online resource for cancer initiation genes.BMC Genomics,19: 552.


Wang DH, Song W, Wei SW, Zheng YF, Chen ZS, Han JD, Zhang HT, Luo JC, Qin YM, Xu ZH,Bai SN. (2018) Characterization of the Ubiquitin C-Terminal Hydrolase and Ubiquitin-Specific Protease Families in Rice (Oryza sativa).Front Plant Sci.,9: 1636.


Liang L, Yang J, Gao ZX, Wang Q, Liang Q, Song ZH, Bi Y, Li CN, He H,Fan LM. (2018) SPINDLY is involved in ABA signaling bypassing the PYR/PYLs/RCARs-mediated pathway and partly through functional ABAR.Environ Exp Bot., 151: 43-54.


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